Desain Primer Spesifik Untuk Identifikasi Ekson 5 Gen Penanda Kanker Payudara (Palb2)

Penulis

  • Wulan Pertiwi Universitas Muhammadiyah Bandung

Kata Kunci:

primers, PALB2, Primer-BLAST, breast cancer

Abstrak

Primers are significant oligonucleotides in the DNA replication process. In-vitro replication using PCR requires primers that can produce specific amplification of the intended target. The process of designing target-specific primers involves many factors such as specificity between primers and target, optimal G-C content in primers, primers lenght, and orientation of primers.The PALB2 gene which is consists of thirteen exons is a tumor suppressor gene in human genom. Mutations in the PALB2 gene will increase the risk of breast cancer. The aim of this study is to obtain a specific primer in amplifying exon 5 in PALB2 genes in human genom, using Primer-BLAST and Oligo Analyzer 1.0.2. The target sequence refers to GenBank (NCBI) NG_007406.1. The amplicon will be produced around 751 bp.

Biografi Penulis

Wulan Pertiwi, Universitas Muhammadiyah Bandung

Program Studi Bioteknologi,
Fakultas Sains dan Teknologi

Referensi

Adank MA, van Mil SE, Gille JJ, Waisfisz Q, Meijers-Heijboer H. 2011. PALB2 analysis in BRCA2-like families. Breast Cancer Res Treat ;127:357-362.

Blanco A, de la Hoya M, Balmaña J, 2012. Detection of a large rearrangement in PALB2 in Spanish breast cancer families with male breast cancer. Breast Cancer Res Treat ;132:307-315.

Casadei S, Norquist BM, Walsh T, et al. 2011. Contribution of inherited mutations in the BRCA2-interacting protein PALB2 to familial breast cancer. Cancer Res ;71:2222-2229.

Ding YC, Steele L, Kuan CJ, Greilac S, Neuhausen SL. 2011. Mutations in BRCA2 and PALB2 in male breast cancer cases from the United States. Breast Cancer Res Treat ;126:771-778.

Eisen A, Lubinski J, Klijn J, Miller P, Lunch HT, Offit K, Weber B, Rebbeck T, Neuhausen SL, Ghadirian P, Foulkes WD, Gershoni-Baruch R, Friedman E, Rennert G, Wagner T, Isaacs C, KimSing C, Aisworth P, Sun P, Narod SA.

Breast cancer risk following bilateral oophorectomy in BRCA1 and BRCA2 mutation carriers: an international case-control study. J Clin Oncol 23(30):7491-7496.

Erkko H, Xia B, Nikkilä J, et al. 2007. A recurrent mutation in PALB2 in Finnish cancer families. Nature ;446:316-319.

Giordano, S.H.. 2018. Breast Cancer in Men. N Engl J Med;378:2311-2320. DOI: 10.1056/NEJMra1707939.

Helmut H., dan Paul R.A. 2018. PALB2 (Partner and Localizer of BRCA2). Departement of Pediatric III, University Children’s Hospital Essen, University Duisburg-Essen, Essen Germany. Division of Experimental Hematolog & Cancer Biology, Children’s Hospital Medical Center, Cincinnati, USA.

Hermela Shimelis*, Holly LaDuca*, Chunling Hu, Steven N. Hart, Jie Na, Abigail Thomas, Margaret Akinhanmi, Raymond M. Moore, Hiltrud Brauch, Angela Cox, Diana M. Eccles, Amanda Ewart-Toland, Peter A. Fasching, Florentia Fostira, Judy Garber, Andrew K. Godwin, Irene Konstantopoulou, Heli Nevanlinna, Priyanka Sharma, Drakoulis Yannoukakos, Song Yao, Bing-Jian Feng, Brigette Tippin Davis, Jenna Lilyquist, Tina Pesaran, David E. Goldgar, Eric C. Polley, Jill S.

Dolinsky, Fergus J. 2018. TripleNegative Breast Cancer Risk Genes Identified by Multigene Hereditary Cancer Panel Testing. Couch. JNCI J

Natl Cancer Inst. 110(8): djy106. Doi: 10.1093/jnci/djy106.

##submission.additionalFiles##

Diterbitkan

2021-01-09

Cara Mengutip

[1]
W. Pertiwi, “Desain Primer Spesifik Untuk Identifikasi Ekson 5 Gen Penanda Kanker Payudara (Palb2)”, JSTE, vol. 1, no. 1, hlm. 63–68, Jan 2021.

Terbitan

Bagian

Artikel

Deprecated: Function get_magic_quotes_runtime() is deprecated in /var/www/html/ejournal/lib/pkp/lib/vendor/adodb/adodb-php/adodb.inc.php on line 2067

Deprecated: Function get_magic_quotes_runtime() is deprecated in /var/www/html/ejournal/lib/pkp/lib/vendor/adodb/adodb-php/adodb.inc.php on line 2067

Deprecated: Function get_magic_quotes_runtime() is deprecated in /var/www/html/ejournal/lib/pkp/lib/vendor/adodb/adodb-php/adodb.inc.php on line 2067

Deprecated: Function get_magic_quotes_runtime() is deprecated in /var/www/html/ejournal/lib/pkp/lib/vendor/adodb/adodb-php/adodb.inc.php on line 2067

Deprecated: Function get_magic_quotes_runtime() is deprecated in /var/www/html/ejournal/lib/pkp/lib/vendor/adodb/adodb-php/adodb.inc.php on line 2067